Molecular Docking, Synthesis and Evaluation for Antioxidant and Antibacterial Activity of New Oxazepane and Benzoxazepine Derivatives

Authors

DOI:

https://doi.org/10.21123/bsj.2023.8553

Keywords:

Antioxidant, Benzoxazepine, Biological, Docking, Oxazepane

Abstract

In the field of molecular simulations, molecular docking is a method that can determine the optimal and preferred orientation of a certain molecule related to another when they are coupled to create a stable complex. The strength of the association, or binding affinity, between two molecules can be predicted using knowledge of their preferred orientation.  In this study, a series of prepared compounds were evaluated for their binding modes, potential interactions, and target binding locations. Some derivatives 1,3-oxazepane, and 1,3-benzoxazepine were prepared from three Schiff bases compounds (1S-3S). The compounds (1S-3S) were reacted with succinic anhydride and phthalic anhydride to obtain derivatives of 1,3- oxazepane and 1,3-benzoxazepine (1B-3C). The characterization of prepared compounds was achieved by methods of elemental analysis, FT-IR, 1H, and 13C-NMR spectral analysis. The antibacterial activity of the compounds (1B-3C) was recorded against some isolated bacteria including gram-negative (Staphylococcus aureus), and gram-positive (E.coli) in parallel with Amoxicillin as a regular drug. Compounds (1B-3C) exhibited good values as antibacterial spreading from middling to perfect against the bacteria strains. Moreover, the antioxidant activity of the synthesized compounds (1B-3C) was evaluated using 2,2-diphenyl-1-picrylhydrazyl. The results showed that compounds have the highest values as radical scavenging.

References

Ansar R S, Mazahar F, Satpute R H, Syed A. Overview on Nitrogen containing compounds and their assessment based on ‘International Regulatory Standards, J Drug Deliv Ther. 2018; 8(6) :425-428. https://doi.org/10.22270/jddt.v8i6-s.2156.

Abu-Melha S, Azher OA, Alaysuy O, Alnoman RB, Abualnaja MM, Althagafi I, et al. Synthesis, molecular modeling and antioxidant activity of new thiadiazolyl - triazole analogues. Arab J Chem. 2023; 27(42): 101596. https://doi.org/10.1016/j.jscs.2022.101596.

Ahmed AA, Kurama U M, Buba US, Wakil IM. Synthesis and evaluation of antimicrobial activity of two Schiff bases derived from cyclohexylamine. Algerian J Chem Eng. 2021; 2(1): 49-54. http://dx.doi.org/10.5281/zenodo.5608636. Abu-Yamin A, Mohammad E, Rabie S F, Al-Sbbah I, Al-Hussein Bin Al-Hussein B. Synthesis and Characterization of Benzocaine Schiff base and its Cobalt Complex. Int J Pharm Sci Res. 2020; 12(2): 1009-1013. https://doi.org /10.13040/IJPSR.0975-8232.12(2).1009-13

Kadhim S M, Mahdi S M. Preparation and Characterization of New (Halogenated Azo-Schiff) Ligands Iraq J Sci. 2022; 63(8): 3283-3299. https://doi.org /10.24996/ijs.2022.63.8.4.

Dhekra J H Saad M M . Preparation, Characterization, and Biological Study of New Halogenated Azo-Schiff Base Ligands and Their Complexes J Med Chem Sci. 2023, 6(7): 1555-1576. https://doi.org/10.26655/JMCHEMSCI.2023.7.8.

Kadham SA, Atia AJ K. Synthesis of diimidazole has pyrazole, isoxazole and pyrimidine derivatives and evaluation as antibacterial. Indian J Forensic Med Toxicol. 2020; 14(1): 1048-1052. https://doi.org/10.37506/v14/i1/2020/ijfmt/193044.

Faez AR, Hassan Sh K. Synthesis and characterization of new heterocyclic compounds containing imidazolodine, triazolidine-3-thion, oxazepine derivatives and studding the biological activity," AIP Conf Proc. 2020; 2386(1): 1-10. https://doi.org/10.1063/5.0068017.

Souad A, Djamila BH, Yaser B, Amir B, Mustapha FC. Design Synthesis and Characterization of Novel Sulfonamides Derivatives as Anticancer Agent Targeting EGFR TK, and Development of New Methods of Snthesis by Microwave Irradiation. Int J Org Chem. 2021; 11(4): 119-123. https://doi.org/10.4236/ijoc.2021.114014.

Wenliang Z, Piao M, Chunmei Y, Yuanquan Z, Tao Z, Jiao T, et al. Design, synthesis and antiviral activities of chalcone derivatives containing pyrimidine. Arab J Chem. 2023; 27(1): 101590. https://doi.org/10.1016/j.jscs.2022.101590.

Sangande F, Julianti E, Tjahjono D H. Ligand-Based Pharmacophore Modeling, Molecular Docking, and Molecular Dynamic Studies of Dual Tyrosine Kinase Inhibitor of EGFR. Int J Cell Sci Mol Biol. 2020; 21(20): Article No. 7779. https://doi.org/10.3390/ijms21207779.

Hameed A. Microwave Synthesis of Some New 1,3-Oxazepine Compounds as Photostabilizing Additives for Pmma Films. ANJS. 2012; 15(4): 47-59.

Yousif SA. Synthesis of substituted (oxazepine, Diazepine, tetrazde) via Schiff Bases for 2- Aminobenzo Thaizole Derivatives. Baghdad Sci J. 2013v; 10(3): 736–748.https://doi.org/10.21123/bsj.2013.10.3.736-748.

Israa H I, Noora S M, Mays M A, Haider N . Synthesis, characterization and bioactivity Study from azo –ligand derived frommethyl-2-amino benzoate with some metal ions. Baghdad Sc J. 2023 ; 20(1): 114-120. https://dx.doi.org/10.21123/bsj.2022.6584.

Athra G S, Ahmed AS, Athraa HM. Microwave Synthesis, Characterization of Some Novel Curcumin Compound and its Metal Complexes with Antimicrobial, Antioxidant Studies. Int J Med Pharm Res, 2020; 12(1): 429-448. https://doi.org/10.31838/ijpr/2020.12.01.200.

Sadia N, Shaukat A, Javed I, Muhammad A Z, Tanveer H. Synthesis, comparative theoretical and experimental characterization of some new 1,3,5 triazine based heterocyclic compounds and in vitro evaluation as promising biologically active agents. J Mole Struct. 2022; 1286 : 133622 . https://doi.org/10.1016/j.molstruc.2022.133622.

Shaabani S, Shaabani A, Kucerakova M , Dusek M. A One-Pot Synthesis of Oxazepine-Quinazolinone bis-Heterocyclic Scaffolds via Isocyanides-Based Three-Component Reactions. Front Chem. 2019; 7: 623. https://doi.org/10.3389/fchem.2019.00623.

Noor MW, Al-Hamdani AAS, Al-Zoubi W. Spectroscopic characterization for new complexes with 2,2'-(5,5-dimethylcyclohexane-1,3-diylidene) bis(azan-1-yl-1-ylidene) benzoic acid. J Phys Org Chem. 2020; 33(11): 1-12. https://doi.org/10.1002/poc.4099.

Hacer B. synthesis and Antimicrobial Activities of some Antipyrine-Triazole-Conazoles. Hacettepe J Biol Chem. 2020, 48 (4): 381-387. https://doi.org/10.15671/hjbc.669068.

Rehab M.K, Mustafa AM, Luma S A. DFT Calculations and Experimental Study to Inhibit Carbon Steel Corrosion in Saline Solution by Quinoline-2-One Derivative. Baghdad sci J. 2021; 18(1): 113-123. DOI: https://doi.org/10.21123/bsj.2021.18.1.0113

Sahar SH, Sura KI, Muhaneed AM, Mahasan FA. Synthesis and Characterization of Some Metal Complexes with New Ligand(C15H10N4O7SCl) &Theoretical Treatment. Sys Rev Pharm 2020; 11(12): 747-753. https://doi.org/10.21123/bsj.2022.6359.

Justin JK, Faezeh B, Junbum I, Mahdi A, Atefeh Gh, Cody PD, el at. Structure-Based Design of First-Generation Small Molecule Inhibitors Targeting the Catalytic Pockets of AID, APOBEC3A, and APOBEC3B. ACS Pharmacol Transl Sci. 2021, 4 (4):1390-1407.https://doi.org/10.1021/acsptsci.1c00091.

Hiteshi T. Tanmoy Ch. Vandana S. A Concise Review on the Significance of QSAR in Drug Design. Chem Biomol Eng. 2019; 4(4): 45-51. https://doi.org/10.11648/j.cbe.20190404.11.

Kamal U S , Ramadan AM , Abd- Elmonem M. Developments in the Synthesis of Cinnoline Derivatives. Mini Rev Org Chem. 2019; 16(6): 578-88. https://doi.org/10.2174/1570193x15666180712124148.

Hassan SS, Kadhim NJ, Jaber ZA. Synthesis, Theoretical Study, and Biological Evaluation of Some Metal Ions with Ligand "Methyl -6-[2-(4-Hydroxyphenyl) -2-((1-Phenylethylidene) Amino) Acetamido]-2,2-Dimethyl-5—Oxo-1-Thia-4-Azabicyclo[3.2.0]Heptane-3-Carboxyylate. Baghdad Sci J. 2023; 20(1): 102-113. https://dx.doi.org/10.21123/bsj.2022.6359.

Hawraa M, Maha AL-T , Israa H, Muna S, Surfactant Cloud Point Extraction as a Procedure of Preconcentrating for Metoclopramide Determination Using Spectro Analytical Technique, Baghdad Sci J . 2020; 17(1): 57-65. http://dx.doi.org/10.21123/bsj.2020.17.1.0057.

Song X, Vig BS, Lorenzi PL, Drach JC, Townsend LB, Amidon GL. Amino acid ester prodrugs of the antiviral agent 2-bromo-5, 6-dichloro-1-(β-D-ribofuranosyl) benzimidazole as potential substrates of hPEPT1 transporter. J Med Chem. 2005; 48(4): 1274-7. http://dx.doi.org/10.1021/jm049450i.

Dawoud BYA. Spectrofluorometric study on the interaction between antimicrobial drug sulfamethazine and bovine serum albumin. J Lumin. 2011; 131(5): 1042–1047. https://doi.org/10.1016/j.jlumin.2011.01.019.

Hacer B. Synthesis and Antimicrobial Activities of some Antipyrine-Triazole-Conazoles Bazı Antipirin-Triazol-Konazollerin Sentezi ve Antimikrobiyal Aktiviteleri. Hacettepe J Biol Chem. 2020; 48(4): 381-387. https://doi.org/10.15671/hjbc.669068.

Devi O, Basavaiah K, Vinay K, Revanasiddappa H, Sensitive spectrophotometric determination of metoclopramide hydrochloric in dosage forms and spiked human urine using vanillin .Arab J Chem. 2016; 9: S64-S72. https://doi.org/10.1016/j.arabjc.2011.02.017.

Jirjees VY, Al‐Hamdani AAS, Wannas NM, Farqad AR, Adnan D, Al-Zoubi W. Spectroscopic characterization for new model from Schiff base and its complexes. J Phys Org Chem. 2021 April, 34(4) e4169. https://doi.org/10.21123/bsj.2022.616.

Sundaraganesan N, Joshua BD, Rajamoorthy M, Gangadhar CH. FT-IR, FT-Raman spectra and ab- initio DFT vibrational analysis of 2-chloro-5-aminopyridine. Int J pure and appl Phys. 2007: 45: 969-978. http://doi.org/10.1016/j.saa.2005.07.061.

Signe P, Lee S, Xavier F, Dmitry K. Complementarity of Raman and Infrared Spectroscopy for Rapid Characterization of Fucoidan Extracts. Plant Methods 2021; 4 :1-13 https://doi.org/10.21203/rs.3.rs-95623/v1.

Kamoon RA, Al-Mudhafar MMJ, Omar T N-A. Synthesis, Characterization and Antimicrobial Evaluation of New Azo Compounds Derived from Sulfonamides and Isatin Schiff Base. Int J Chronic Dis Ther. 2020; 10(1): 150-155. https://doi.org/10.25258/ijddt.10.1.22.

Hassan SS, Hassan NM, Baqer SR, saleh AM. Biological Evaluation and Theoretical Study of Bi-dentate Ligand for Amoxicillin Derivative with Some Metal Ions. Baghdad Sci J 2021; 18(4): 1269-1278. https://doi.org/10.21123/bsj.2021.18.4.1269.

Bashir B, Riaz N, Ejaz SA, Saleem M, Ashraf M, Iqbal A, et al. Parsing p-tolyloxy-1,3,4-oxadiazolepropanamides as 15-lipoxygenase inhibitors prop up by in vitro and in silico profiling including structure determination. J Mol Struct. 2023; 1275: 134664. https://doi.org/10.1016/j.molstruc.2022.134664.

Rasheed AM, Al-Bayati SMM, Al-Hasani DA, Shakir MA. Synthesizing Structure and Characterizing Bioactivites of Cr (III), La(III) and Ce(III)Complexes with Nitrogen, Oxygen and Sulphur donor bidentate Schiff base ligands. Baghdad Sci J. 2021; 18 (4): 1547.https://doi.org/10.21123/bsj.2021.18.4(Suppl.).1545.

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Molecular Docking, Synthesis and Evaluation for Antioxidant and Antibacterial Activity of New Oxazepane and Benzoxazepine Derivatives. Baghdad Sci.J [Internet]. [cited 2024 Apr. 30];21(7). Available from: https://bsj.uobaghdad.edu.iq/index.php/BSJ/article/view/8553